Analyze massively parallel reporter assays


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Documentation for package ‘mpra’ version 1.30.1

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mpra-package Analyze massively parallel reporter assays
compute_logratio Compute activity measure (log-ratio) for each element.
getBarcode Class '"MPRASet"'
getDNA Class '"MPRASet"'
getEid Class '"MPRASet"'
getEseq Class '"MPRASet"'
getRNA Class '"MPRASet"'
get_precision_weights Get precision weights from the copy number-variance relationship.
mpra Analyze massively parallel reporter assays
mpralm Linear models for differential analysis of MPRA data
MPRASet Class '"MPRASet"'
MPRASet-class Class '"MPRASet"'
mpraSetAggExample Example data for the mpra package.
mpraSetAllelicExample Example data for the mpra package.
mpraSetExample Example data for the mpra package.
normalize_counts Total count normalization of DNA and RNA counts
show-method Class '"MPRASet"'